Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007105.1 Corchorus olitorius cultivar O-4 contig07130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1223
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22


Found at i:851 original size:21 final size:21

Alignment explanation


    Indices: 821--867  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        811 CCATTCATCA

                 *      *        
        821 TGCCATCACCGGTTAAGCCCG
          1 TGCCACCACCGGCTAAGCCCG

                           *   * 
        842 TGCCACCACCGGCTATGCCTG
          1 TGCCACCACCGGCTAAGCCCG

                 
        863 TGCCA
          1 TGCCA

        868 TCGCCATTCC


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.17, C:0.40, G:0.23, T:0.19


Consensus pattern (21 bp):   
TGCCACCACCGGCTAAGCCCG
Done.