Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007109.1 Corchorus olitorius cultivar O-4 contig07134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31


Found at i:638 original size:25 final size:26

Alignment explanation


    Indices: 604--663  Score: 95
    Period size: 26  Copynumber: 2.3  Consensus size: 26

        594 GGTATTGCTG

                 *         *          
        604 ACGTGCCAATGCCA-GTTGGACCAAA
          1 ACGTGGCAATGCCACATTGGACCAAA

                                      
        629 ACGTGGCAATGCCACATTGGACCAAA
          1 ACGTGGCAATGCCACATTGGACCAAA

                     
        655 ACGTGGCAA
          1 ACGTGGCAA

        664 GGTCACGTCA


Statistics
Matches: 32,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  25   13  0.41
  26   19  0.59

ACGTcount: A:0.33, C:0.27, G:0.25, T:0.15


Consensus pattern (26 bp):   
ACGTGGCAATGCCACATTGGACCAAA

Found at i:677 original size:26 final size:26

Alignment explanation


    Indices: 622--679  Score: 71
    Period size: 26  Copynumber: 2.2  Consensus size: 26

        612 ATGCCAGTTG

                            *       **
        622 GACCAAAACGTGGCAATGCCACATTG
          1 GACCAAAACGTGGCAAGGCCACATCA

                              *   *   
        648 GACCAAAACGTGGCAAGGTCACGTCA
          1 GACCAAAACGTGGCAAGGCCACATCA

                  
        674 GACCAA
          1 GACCAA

        680 GATGCTGACA


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.36, C:0.28, G:0.24, T:0.12


Consensus pattern (26 bp):   
GACCAAAACGTGGCAAGGCCACATCA
Done.