Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007112.1 Corchorus olitorius cultivar O-4 contig07137, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1091
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32


Found at i:252 original size:31 final size:31

Alignment explanation


    Indices: 195--253  Score: 75
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        185 TTCAGCTCAT

                           * *             
        195 CTGGATTCAGGTCATTCGGGTCTCGGGTCTG
          1 CTGGATTCAGGTCATGCAGGTCTCGGGTCTG

                   *                     
        226 CTGGATTTAGGGTCATGCAGGT-TCGGGT
          1 CTGGATTCA-GGTCATGCAGGTCTCGGGT

        254 TTTGGCCTCA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  31   14  0.58
  32   10  0.42

ACGTcount: A:0.12, C:0.19, G:0.37, T:0.32


Consensus pattern (31 bp):   
CTGGATTCAGGTCATGCAGGTCTCGGGTCTG
Done.