Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007119.1 Corchorus olitorius cultivar O-4 contig07144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.34


Found at i:829 original size:16 final size:16

Alignment explanation


    Indices: 808--840  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        798 AAAAAAATTA

                            
        808 TGGCATATATTAAGAT
          1 TGGCATATATTAAGAT

                            
        824 TGGCATATATTAAGAT
          1 TGGCATATATTAAGAT

             
        840 T
          1 T

        841 ATGATGCATG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.36, C:0.06, G:0.18, T:0.39


Consensus pattern (16 bp):   
TGGCATATATTAAGAT
Done.