Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007121.1 Corchorus olitorius cultivar O-4 contig07146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1416
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41


Found at i:1041 original size:39 final size:40

Alignment explanation


    Indices: 985--1065  Score: 128
    Period size: 39  Copynumber: 2.0  Consensus size: 40

        975 TTTAATTCCT

                                                    
        985 ATGTAATATATATAATAACTAAAATACTTACATTAATTAA
          1 ATGTAATATATATAATAACTAAAATACTTACATTAATTAA

                     *          *        *          
       1025 ATGTAATA-CTATAATAACTGAAATACTTGCATTAATTAA
          1 ATGTAATATATATAATAACTAAAATACTTACATTAATTAA

              
       1064 AT
          1 AT

       1066 TCTTAGGTAC


Statistics
Matches: 38,  Mismatches: 3, Indels: 1
        0.90            0.07        0.02

Matches are distributed among these distances:
  39   30  0.79
  40    8  0.21

ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37


Consensus pattern (40 bp):   
ATGTAATATATATAATAACTAAAATACTTACATTAATTAA
Done.