Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007122.1 Corchorus olitorius cultivar O-4 contig07147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1210
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31


Found at i:571 original size:16 final size:16

Alignment explanation


    Indices: 550--582  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        540 CTACGTACAA

                            
        550 GCTCTTTCTGAAACTT
          1 GCTCTTTCTGAAACTT

                            
        566 GCTCTTTCTGAAACTT
          1 GCTCTTTCTGAAACTT

             
        582 G
          1 G

        583 TGACATACCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.18, C:0.24, G:0.15, T:0.42


Consensus pattern (16 bp):   
GCTCTTTCTGAAACTT
Done.