Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007128.1 Corchorus olitorius cultivar O-4 contig07153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2612
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30


Found at i:861 original size:81 final size:81

Alignment explanation


    Indices: 722--877  Score: 276
    Period size: 81  Copynumber: 1.9  Consensus size: 81

        712 GCTAGAAAAT

                                                                 *           
        722 GGCATAATCTTGTGAGATCATTAAAAGAGTAGTGGACCGCCAATCCATACGTTGAGTGCAAACAC
          1 GGCATAATCTTGTGAGATCATTAAAAGAGTAGTGGACCGCCAATCCATACGTTCAGTGCAAACAC

                            
        787 GAGAGCACAAGAAGAA
         66 GAGAGCACAAGAAGAA

                                    *           *            *               
        803 GGCATAATCTTGTGAGATCATTAAGAGAGTAGTGGATCGCCAATCCATAGGTTCAGTGCAAACAC
          1 GGCATAATCTTGTGAGATCATTAAAAGAGTAGTGGACCGCCAATCCATACGTTCAGTGCAAACAC

                      
        868 GAGAGCACAA
         66 GAGAGCACAA

        878 CAAAGGTAAA


Statistics
Matches: 71,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  81   71  1.00

ACGTcount: A:0.37, C:0.19, G:0.25, T:0.20


Consensus pattern (81 bp):   
GGCATAATCTTGTGAGATCATTAAAAGAGTAGTGGACCGCCAATCCATACGTTCAGTGCAAACAC
GAGAGCACAAGAAGAA
Done.