Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000713.1 Corchorus olitorius cultivar O-4 contig00713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36


Found at i:399 original size:58 final size:58

Alignment explanation


    Indices: 301--410  Score: 168
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        291 ATCATGCCTC

                 *                                                    
        301 GGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAAGCTTT
          1 GGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAAGCTTT

                                  *             *           *    
        359 GGTCCGAAAACGTCTTTTTTTATGCATCTAAT-AAAGAACATGTCACTTGATA
          1 GGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATA

        411 TTTGATTAAT


Statistics
Matches: 47,  Mismatches: 4, Indels: 2
        0.89            0.08        0.04

Matches are distributed among these distances:
  58   31  0.66
  59   16  0.34

ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34


Consensus pattern (58 bp):   
GGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAAGCTTT
Done.