Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000714.1 Corchorus olitorius cultivar O-4 contig00714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33


Found at i:572 original size:31 final size:30

Alignment explanation


    Indices: 503--588  Score: 95
    Period size: 29  Copynumber: 2.9  Consensus size: 30

        493 GCTTATTCAC

                   *             **    *  
        503 AAAGTTCGGGCCCTTATTTGACCTTTTTCT
          1 AAAGTTCAGGCCCTTATTTGAGATTTTCCT

             *                            
        533 -TAGTTCAGGCCCTTATTTGAGATTTTCCT
          1 AAAGTTCAGGCCCTTATTTGAGATTTTCCT

                                        
        562 GAAAGTTCAGGGCCC-TATTTGAGATTT
          1 -AAAGTTCA-GGCCCTTATTTGAGATTT

        589 CAGCCCATCC


Statistics
Matches: 47,  Mismatches: 6, Indels: 5
        0.81            0.10        0.09

Matches are distributed among these distances:
  29   24  0.51
  31   18  0.38
  32    5  0.11

ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41


Consensus pattern (30 bp):   
AAAGTTCAGGCCCTTATTTGAGATTTTCCT
Done.