Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007150.1 Corchorus olitorius cultivar O-4 contig07175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25


Found at i:609 original size:13 final size:13

Alignment explanation


    Indices: 572--617  Score: 69
    Period size: 12  Copynumber: 3.7  Consensus size: 13

        562 TTATGCACCC

                         
        572 AAAACATTTAT-T
          1 AAAACATTTATAT

                         
        584 AAAACATTT-TAT
          1 AAAACATTTATAT

               *         
        596 AAAGCATTTATAT
          1 AAAACATTTATAT

                     
        609 AAAACATTT
          1 AAAACATTT

        618 CCTCAACGGG


Statistics
Matches: 30,  Mismatches: 2, Indels: 3
        0.86            0.06        0.09

Matches are distributed among these distances:
  11    1  0.03
  12   18  0.60
  13   11  0.37

ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39


Consensus pattern (13 bp):   
AAAACATTTATAT
Done.