Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007153.1 Corchorus olitorius cultivar O-4 contig07178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2031
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36


Found at i:25 original size:2 final size:2

Alignment explanation


    Indices: 18--42  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

          8 GCTAAAACTA

                                                 
         18 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

         43 ATCTAGTTGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:558 original size:33 final size:33

Alignment explanation


    Indices: 520--612  Score: 177
    Period size: 33  Copynumber: 2.8  Consensus size: 33

        510 CCCCTTTTAC

                                             
        520 TAAACCTTTTGCCCGGTTTTTCTGTAACAAGTT
          1 TAAACCTTTTGCCCGGTTTTTCTGTAACAAGTT

                              *              
        553 TAAACCTTTTGCCCGGTTGTTCTGTAACAAGTT
          1 TAAACCTTTTGCCCGGTTTTTCTGTAACAAGTT

                                       
        586 TAAACCTTTTGCCCGGTTTTTCTGTAA
          1 TAAACCTTTTGCCCGGTTTTTCTGTAA

        613 TCTCACTTCT


Statistics
Matches: 58,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   58  1.00

ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42


Consensus pattern (33 bp):   
TAAACCTTTTGCCCGGTTTTTCTGTAACAAGTT
Done.