Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007161.1 Corchorus olitorius cultivar O-4 contig07186, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1689
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38


Found at i:842 original size:78 final size:78

Alignment explanation


    Indices: 753--911  Score: 282
    Period size: 78  Copynumber: 2.0  Consensus size: 78

        743 AGATTTATAG

                                                                        * *  
        753 TTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTATAACTATTTTATTT
          1 TTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTATAACTATTTCAGTT

                    *    
        818 TACCATTTTACTA
         66 TACCATTTAACTA

                                                   *                         
        831 TTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATTTAATATCTTTATAACTATTTCAGTT
          1 TTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTATAACTATTTCAGTT

                         
        896 TACCATTTAACTA
         66 TACCATTTAACTA

               
        909 TTT
          1 TTT

        912 CAACTAGAAA


Statistics
Matches: 77,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  78   77  1.00

ACGTcount: A:0.35, C:0.14, G:0.01, T:0.51


Consensus pattern (78 bp):   
TTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTATAACTATTTCAGTT
TACCATTTAACTA
Done.