Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007162.1 Corchorus olitorius cultivar O-4 contig07187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2021
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33


Found at i:931 original size:21 final size:21

Alignment explanation


    Indices: 905--948  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        895 TTGTTTTTAG

                                 
        905 CTCAATCATAATTCCCCCACA
          1 CTCAATCATAATTCCCCCACA

                                 
        926 CTCAATCATAATTCCCCCACA
          1 CTCAATCATAATTCCCCCACA

              
        947 CT
          1 CT

        949 AAACCCTAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.32, C:0.43, G:0.00, T:0.25


Consensus pattern (21 bp):   
CTCAATCATAATTCCCCCACA
Done.