Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007163.1 Corchorus olitorius cultivar O-4 contig07188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36


Found at i:589 original size:14 final size:14

Alignment explanation


    Indices: 570--598  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        560 TTTTTTGCTC

                          
        570 TGTGGACCTTTTTT
          1 TGTGGACCTTTTTT

                          
        584 TGTGGACCTTTTTT
          1 TGTGGACCTTTTTT

             
        598 T
          1 T

        599 TTTACTGGGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.07, C:0.14, G:0.21, T:0.59


Consensus pattern (14 bp):   
TGTGGACCTTTTTT

Found at i:914 original size:3 final size:3

Alignment explanation


    Indices: 908--967  Score: 86
    Period size: 3  Copynumber: 19.3  Consensus size: 3

        898 TTTTTTTAAC

                                                                          
        908 ATA ATA ATA TATA ATA ATA ATA ATAA ATA AT- ATA TATA ATA ATA ATA
          1 ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA ATA ATA

                             
        955 ATA ATA ATA ATA A
          1 ATA ATA ATA ATA A

        968 GAGGGGAAAG


Statistics
Matches: 53,  Mismatches: 0, Indels: 8
        0.87            0.00        0.13

Matches are distributed among these distances:
   2    2  0.04
   3   42  0.79
   4    9  0.17

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (3 bp):   
ATA

Done.