Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007166.1 Corchorus olitorius cultivar O-4 contig07191, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1100
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30


Found at i:1093 original size:16 final size:15

Alignment explanation


    Indices: 1055--1096  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1045 ACAGAGGTTG

                           
       1055 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                           
       1070 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       1085 ACTAGAAAACAA
          1 AC-AGAAAACAA

       1097 AACA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.67, C:0.14, G:0.07, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.