Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007169.1 Corchorus olitorius cultivar O-4 contig07194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1563
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:1340 original size:19 final size:19

Alignment explanation


    Indices: 1318--1354  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1308 GGTCCTGAAG

                               
       1318 GGTGACATGTGTCCTTTAT
          1 GGTGACATGTGTCCTTTAT

                              
       1337 GGTGACATGTGTCCTTTA
          1 GGTGACATGTGTCCTTTA

       1355 GGGATTATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.16, C:0.16, G:0.27, T:0.41


Consensus pattern (19 bp):   
GGTGACATGTGTCCTTTAT
Done.