Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000717.1 Corchorus olitorius cultivar O-4 contig00717, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3420
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--41  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

                                                                         
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

         42 CTTGGAAGCA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:1989 original size:14 final size:13

Alignment explanation


    Indices: 1966--1996  Score: 53
    Period size: 14  Copynumber: 2.3  Consensus size: 13

       1956 AGATTGCTAA

                         
       1966 TTTTTTTTGTTTT
          1 TTTTTTTTGTTTT

                          
       1979 TTTTGTTTTGTTTT
          1 TTTT-TTTTGTTTT

                
       1993 TTTT
          1 TTTT

       1997 AACGATTGCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    4  0.24
  14   13  0.76

ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90


Consensus pattern (13 bp):   
TTTTTTTTGTTTT
Done.