Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007171.1 Corchorus olitorius cultivar O-4 contig07196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1598
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:930 original size:27 final size:26

Alignment explanation


    Indices: 885--935  Score: 66
    Period size: 27  Copynumber: 1.9  Consensus size: 26

        875 ACAAAACCTT

                         **    *      
        885 TTACCATTTTATTTTTTTCTAAAAAC
          1 TTACCATTTTATTAATTTCCAAAAAC

                                     
        911 TTACCAATTTTATTAATTTCCAAAA
          1 TTACC-ATTTTATTAATTTCCAAAA

        936 TCTTCTTTTG


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  26    5  0.24
  27   16  0.76

ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49


Consensus pattern (26 bp):   
TTACCATTTTATTAATTTCCAAAAAC
Done.