Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007175.1 Corchorus olitorius cultivar O-4 contig07200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1708
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34


Found at i:605 original size:14 final size:14

Alignment explanation


    Indices: 586--616  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        576 TTTATAATTC

                          
        586 CTAACTCTATAACT
          1 CTAACTCTATAACT

                  *       
        600 CTAACTTTATAACT
          1 CTAACTCTATAACT

               
        614 CTA
          1 CTA

        617 GTTGAAGAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39


Consensus pattern (14 bp):   
CTAACTCTATAACT
Done.