Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007182.1 Corchorus olitorius cultivar O-4 contig07207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37


Found at i:918 original size:31 final size:31

Alignment explanation


    Indices: 844--908  Score: 112
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        834 ACTAAATACT

                  *  *                     
        844 AAAAAATTCTCTTATGTTTTTCTTTTGGGAC
          1 AAAAAAATCCCTTATGTTTTTCTTTTGGGAC

                                           
        875 AAAAAAATCCCTTATGTTTTTCTTTTGGGAC
          1 AAAAAAATCCCTTATGTTTTTCTTTTGGGAC

               
        906 AAA
          1 AAA

        909 TCAGTCCCTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43


Consensus pattern (31 bp):   
AAAAAAATCCCTTATGTTTTTCTTTTGGGAC

Found at i:1086 original size:31 final size:29

Alignment explanation


    Indices: 1020--1099  Score: 106
    Period size: 29  Copynumber: 2.7  Consensus size: 29

       1010 CTCATTTTTG

                *          *        *    
       1020 AAACGTAAGGGATTAATTTGTCCCGAAAA
          1 AAACATAAGGGATTATTTTGTCCCAAAAA

                                           
       1049 AAACATAAGGGATTATTTTGTCCCAAAATCA
          1 AAACATAAGGGATTATTTTGTCCCAAAA--A

                          *     
       1080 AAACATAAGGGATTTTTTTG
          1 AAACATAAGGGATTATTTTG

       1100 GGTATTTAGC


Statistics
Matches: 45,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  29   25  0.56
  31   20  0.44

ACGTcount: A:0.40, C:0.12, G:0.17, T:0.30


Consensus pattern (29 bp):   
AAACATAAGGGATTATTTTGTCCCAAAAA

Done.