Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007183.1 Corchorus olitorius cultivar O-4 contig07208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41


Found at i:738 original size:25 final size:24

Alignment explanation


    Indices: 700--751  Score: 68
    Period size: 25  Copynumber: 2.1  Consensus size: 24

        690 CCTTGAACTT

                          *         
        700 TTTAATATTTAATTCTTAAATTTA
          1 TTTAATATTTAATTATTAAATTTA

                  *           *      
        724 TTTAATGTCTTAATTATTCAATTTA
          1 TTTAATAT-TTAATTATTAAATTTA

               
        749 TTT
          1 TTT

        752 TACAATCCAC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  24    7  0.29
  25   17  0.71

ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60


Consensus pattern (24 bp):   
TTTAATATTTAATTATTAAATTTA
Done.