Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000719.1 Corchorus olitorius cultivar O-4 contig00719, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1597
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30


Found at i:604 original size:14 final size:14

Alignment explanation


    Indices: 585--615  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        575 ACTTATATAG

                          
        585 TATATAGATAGAGA
          1 TATATAGATAGAGA

                      *   
        599 TATATAGATATAGA
          1 TATATAGATAGAGA

               
        613 TAT
          1 TAT

        616 CTATATACTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.48, C:0.00, G:0.16, T:0.35


Consensus pattern (14 bp):   
TATATAGATAGAGA
Done.