Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007192.1 Corchorus olitorius cultivar O-4 contig07217, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34


Found at i:218 original size:15 final size:16

Alignment explanation


    Indices: 198--227  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        188 TGTAAGTTTA

                            
        198 TCAAAA-ATCAATTTT
          1 TCAAAAGATCAATTTT

                           
        213 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

        228 GAATTCACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37


Consensus pattern (16 bp):   
TCAAAAGATCAATTTT

Found at i:1039 original size:13 final size:13

Alignment explanation


    Indices: 1021--1046  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1011 CTAAGCATTC

                         
       1021 ATCAATCAATCAA
          1 ATCAATCAATCAA

                         
       1034 ATCAATCAATCAA
          1 ATCAATCAATCAA

       1047 TTTATGTATG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23


Consensus pattern (13 bp):   
ATCAATCAATCAA

Found at i:1251 original size:15 final size:15

Alignment explanation


    Indices: 1228--1262  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1218 TTAGAATAAT

                *          
       1228 CAATCCAAAAACAAA
          1 CAATTCAAAAACAAA

                           
       1243 CAATTCAAAAACAAA
          1 CAATTCAAAAACAAA

                 
       1258 CAATT
          1 CAATT

       1263 TTCTATCCTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14


Consensus pattern (15 bp):   
CAATTCAAAAACAAA
Done.