Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007195.1 Corchorus olitorius cultivar O-4 contig07220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1111
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37


Found at i:613 original size:31 final size:30

Alignment explanation


    Indices: 574--632  Score: 75
    Period size: 31  Copynumber: 1.9  Consensus size: 30

        564 TGTCCCTCTG

                              *            
        574 AAAAAAAAACAAAA-GAGTGTTAGTAACCTC
          1 AAAAAAAAA-AAAAGGAGAGTTAGTAACCTC

                            *            
        604 AAAAGAAAAAAAAAGGGGAGTTAGTAACC
          1 AAAA-AAAAAAAAAGGAGAGTTAGTAACC

        633 CCTAAATCAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  30    8  0.32
  31   17  0.68

ACGTcount: A:0.58, C:0.10, G:0.19, T:0.14


Consensus pattern (30 bp):   
AAAAAAAAAAAAAGGAGAGTTAGTAACCTC
Done.