Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007196.1 Corchorus olitorius cultivar O-4 contig07221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1155
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.33


Found at i:241 original size:33 final size:33

Alignment explanation


    Indices: 178--247  Score: 95
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        168 AGAATTTGTT

                                            *
        178 TCATCACAAACAACACCTAAAACAGATTTAGTG
          1 TCATCACAAACAACACCTAAAACAGATTTAGTA

                            *    **  *       
        211 TCATCACAAACAACACTTAAATTAGGTTTAGTA
          1 TCATCACAAACAACACCTAAAACAGATTTAGTA

                
        244 TCAT
          1 TCAT

        248 TACTAATAAC


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27


Consensus pattern (33 bp):   
TCATCACAAACAACACCTAAAACAGATTTAGTA
Done.