Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007199.1 Corchorus olitorius cultivar O-4 contig07224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1815
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25


Found at i:1071 original size:21 final size:21

Alignment explanation


    Indices: 1043--1097  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1033 CGGCCATTCA

                           *     
       1043 CCGTGCCACCACCGGTTAAGC
          1 CCGTGCCACCACCGGCTAAGC

             *        *       *  
       1064 CTGTGCCACCCCCGGCTATGC
          1 CCGTGCCACCACCGGCTAAGC

                    *    
       1085 CCGTGCCATCACC
          1 CCGTGCCACCACC

       1098 ATTCAGTGGT


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.15, C:0.47, G:0.22, T:0.16


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCTAAGC

Found at i:1473 original size:15 final size:14

Alignment explanation


    Indices: 1453--1482  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1443 ATCTTTTTAA

                           
       1453 TTTTCCTTGCATTAT
          1 TTTTCCTTG-ATTAT

                          
       1468 TTTTCCTTGATTAT
          1 TTTTCCTTGATTAT

             
       1482 T
          1 T

       1483 GCTTTGATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63


Consensus pattern (14 bp):   
TTTTCCTTGATTAT
Done.