Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000720.1 Corchorus olitorius cultivar O-4 contig00720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1182
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:165 original size:20 final size:18

Alignment explanation


    Indices: 140--176  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        130 TGAAGACCAT

                                
        140 TTGAAGACTTAATTGAAGAC
          1 TTGAAGAC-T-ATTGAAGAC

                             
        160 TTGAAGACTATTGAAGA
          1 TTGAAGACTATTGAAGA

        177 TTTATTTCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    8  0.47
  19    1  0.06
  20    8  0.47

ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30


Consensus pattern (18 bp):   
TTGAAGACTATTGAAGAC
Done.