Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007200.1 Corchorus olitorius cultivar O-4 contig07225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1607
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:534 original size:28 final size:28

Alignment explanation


    Indices: 512--589  Score: 138
    Period size: 28  Copynumber: 2.8  Consensus size: 28

        502 CCCCTAGATG

                                        
        512 TGTAAAATGACCAAAATGCCCCTGGACA
          1 TGTAAAATGACCAAAATGCCCCTGGACA

              *                         
        540 TGCAAAATGACCAAAATGCCCCTGGACA
          1 TGTAAAATGACCAAAATGCCCCTGGACA

                         *        
        568 TGTAAAATGACCAGAATGCCCC
          1 TGTAAAATGACCAAAATGCCCC

        590 CGCCCCCATA


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  28   47  1.00

ACGTcount: A:0.38, C:0.27, G:0.18, T:0.17


Consensus pattern (28 bp):   
TGTAAAATGACCAAAATGCCCCTGGACA
Done.