Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007205.1 Corchorus olitorius cultivar O-4 contig07230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1558
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35


Found at i:933 original size:21 final size:21

Alignment explanation


    Indices: 867--933  Score: 57
    Period size: 21  Copynumber: 3.2  Consensus size: 21

        857 TAAGAATTTA

                        *        
        867 ATTAATGTAAGTGTTTTAGTT
          1 ATTAATGTAAGTATTTTAGTT

                       *    ** *  
        888 ATT-ATAGT-ATTATTACATTT
          1 ATTAAT-GTAAGTATTTTAGTT

                                  
        908 AATTAATGTAAGTATTTTAGTT
          1 -ATTAATGTAAGTATTTTAGTT

                
        930 ATTA
          1 ATTA

        934 TTTATATTAC


Statistics
Matches: 33,  Mismatches: 9, Indels: 8
        0.66            0.18        0.16

Matches are distributed among these distances:
  20    9  0.27
  21   14  0.42
  22   10  0.30

ACGTcount: A:0.34, C:0.01, G:0.12, T:0.52


Consensus pattern (21 bp):   
ATTAATGTAAGTATTTTAGTT
Done.