Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007206.1 Corchorus olitorius cultivar O-4 contig07231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1192
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38


Found at i:621 original size:2 final size:2

Alignment explanation


    Indices: 614--639  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        604 GGATGCAATC

                                                  
        614 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        640 GCTTAGATCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:878 original size:11 final size:11

Alignment explanation


    Indices: 862--892  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

        852 TTTATTTTTT

                       
        862 GTTTTTGTTTC
          1 GTTTTTGTTTC

                      *
        873 GTTTTTGTTTT
          1 GTTTTTGTTTC

                     
        884 GTTTTTGTT
          1 GTTTTTGTT

        893 AAGCTGTCAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.00, C:0.03, G:0.19, T:0.77


Consensus pattern (11 bp):   
GTTTTTGTTTC
Done.