Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007209.1 Corchorus olitorius cultivar O-4 contig07234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27


Found at i:1216 original size:11 final size:11

Alignment explanation


    Indices: 1200--1240  Score: 64
    Period size: 11  Copynumber: 3.7  Consensus size: 11

       1190 CTAAGGGTAA

                       
       1200 AGGAAAAAGCT
          1 AGGAAAAAGCT

                       
       1211 AGGAAAAAGCT
          1 AGGAAAAAGCT

                 **    
       1222 AGGAAGGAGCT
          1 AGGAAAAAGCT

                    
       1233 AGGAAAAA
          1 AGGAAAAA

       1241 CCCTACTCCT


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  11   26  1.00

ACGTcount: A:0.54, C:0.07, G:0.32, T:0.07


Consensus pattern (11 bp):   
AGGAAAAAGCT
Done.