Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007213.1 Corchorus olitorius cultivar O-4 contig07238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1192
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33


Found at i:571 original size:38 final size:37

Alignment explanation


    Indices: 529--613  Score: 134
    Period size: 38  Copynumber: 2.3  Consensus size: 37

        519 TGTTAAGTTT

                                     *            
        529 TTTTCAAATTGGGAAAGTTCCCATTCAGTTTTTCAAAG
          1 TTTTCAAATTGGGAAAGTTCCCATTAAG-TTTTCAAAG

                     *                           
        567 TTTTCAAATCGGGAAAGTTCCCATTAAGTTTTCAAAG
          1 TTTTCAAATTGGGAAAGTTCCCATTAAGTTTTCAAAG

             *        
        604 TATTCAAATT
          1 TTTTCAAATT

        614 AGCTCTTTTA


Statistics
Matches: 43,  Mismatches: 4, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  37   17  0.40
  38   26  0.60

ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39


Consensus pattern (37 bp):   
TTTTCAAATTGGGAAAGTTCCCATTAAGTTTTCAAAG

Done.