Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007215.1 Corchorus olitorius cultivar O-4 contig07240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1455
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24


Found at i:1251 original size:16 final size:15

Alignment explanation


    Indices: 1213--1254  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1203 ACAGAGGTTG

                           
       1213 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                     *     
       1228 ACAGAAAACGATTAA
          1 ACAGAAAACAATTAA

                        
       1243 ACTAGAAAACAA
          1 AC-AGAAAACAA

       1255 AGCAAAATAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   16  0.67
  16    8  0.33

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.