Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007226.1 Corchorus olitorius cultivar O-4 contig07251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1412
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37


Found at i:673 original size:32 final size:32

Alignment explanation


    Indices: 608--699  Score: 89
    Period size: 32  Copynumber: 2.9  Consensus size: 32

        598 TTGAGTCAAG

                    *              *    *   
        608 TCGGGTTATATTTAGGTCAGGTTGATTCGGGT
          1 TCGGGTTAAATTTAGGTCAGGTTAATTCAGGT

                         *     *       *    
        640 TCGGGTTAAATTTGGGTCATGTTAATTTAGGT
          1 TCGGGTTAAATTTAGGTCAGGTTAATTCAGGT

                 *                        
        672 TC-GGATAAATTTTTA-GTCAGGTTAATTC
          1 TCGGGTTAAA--TTTAGGTCAGGTTAATTC

        700 GGATTTGGAC


Statistics
Matches: 48,  Mismatches: 10, Indels: 4
        0.77            0.16        0.06

Matches are distributed among these distances:
  31    6  0.12
  32   39  0.81
  33    3  0.06

ACGTcount: A:0.22, C:0.09, G:0.27, T:0.42


Consensus pattern (32 bp):   
TCGGGTTAAATTTAGGTCAGGTTAATTCAGGT
Done.