Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007229.1 Corchorus olitorius cultivar O-4 contig07254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27


Found at i:473 original size:23 final size:23

Alignment explanation


    Indices: 446--489  Score: 79
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        436 CCGACGGCTA

                           *       
        446 GGTCGGTCGCGACCCTGATCGAT
          1 GGTCGGTCGCGACCCAGATCGAT

                                 
        469 GGTCGGTCGCGACCCAGATCG
          1 GGTCGGTCGCGACCCAGATCG

        490 CGACTGACCG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18


Consensus pattern (23 bp):   
GGTCGGTCGCGACCCAGATCGAT

Found at i:863 original size:22 final size:21

Alignment explanation


    Indices: 818--865  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        808 CGCCCCTCCA

                               * 
        818 TGATTTTAGATGTTGTTGGGT
          1 TGATTTTAGATGTTGTTGGAT

                   *          *   
        839 TGATTTTTGATGTTGTTTTGAT
          1 TGATTTTAGATGTTG-TTGGAT

                 
        861 TGATT
          1 TGATT

        866 AAGGTTGAGA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  21   14  0.61
  22    9  0.39

ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58


Consensus pattern (21 bp):   
TGATTTTAGATGTTGTTGGAT
Done.