Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000723.1 Corchorus olitorius cultivar O-4 contig00723, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32


Found at i:694 original size:32 final size:32

Alignment explanation


    Indices: 649--709  Score: 97
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        639 AAATATGTTT

                                             
        649 GAAAAATAAGGGTATAAT-GATCGATTCAATTA
          1 GAAAAATAAGGGTATAATAG-TCGATTCAATTA

                    *                    
        681 GAAAAATACGGGTATAATAGTCGATTCAA
          1 GAAAAATAAGGGTATAATAGTCGATTCAA

        710 AAGTTTTACA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  32   26  0.96
  33    1  0.04

ACGTcount: A:0.46, C:0.08, G:0.20, T:0.26


Consensus pattern (32 bp):   
GAAAAATAAGGGTATAATAGTCGATTCAATTA
Done.