Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000724.1 Corchorus olitorius cultivar O-4 contig00724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35


Found at i:640 original size:15 final size:15

Alignment explanation


    Indices: 595--634  Score: 62
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        585 TTAGTTCAAT

                *          
        595 TGGGCAGGGGTGGGG
          1 TGGGAAGGGGTGGGG

                           
        610 TGGGAAGGGGTGGGG
          1 TGGGAAGGGGTGGGG

                *     
        625 TGGGGAGGGG
          1 TGGGAAGGGG

        635 GAGGGTTTGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.10, C:0.03, G:0.75, T:0.12


Consensus pattern (15 bp):   
TGGGAAGGGGTGGGG
Done.