Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007240.1 Corchorus olitorius cultivar O-4 contig07265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2724
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:1355 original size:13 final size:13

Alignment explanation


    Indices: 1337--1366  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       1327 GTATTCTGCA

                         
       1337 AGCTTTAGTGAAG
          1 AGCTTTAGTGAAG

                  *      
       1350 AGCTTTTGTGAAG
          1 AGCTTTAGTGAAG

                
       1363 AGCT
          1 AGCT

       1367 AATAGATTCC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33


Consensus pattern (13 bp):   
AGCTTTAGTGAAG
Done.