Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007246.1 Corchorus olitorius cultivar O-4 contig07271, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31


Found at i:185 original size:13 final size:13

Alignment explanation


    Indices: 163--194  Score: 57
    Period size: 13  Copynumber: 2.5  Consensus size: 13

        153 AAGACATTGA

                         
        163 AATAGT-ATTAAT
          1 AATAGTAATTAAT

                         
        175 AATAGTAATTAAT
          1 AATAGTAATTAAT

                   
        188 AATAGTA
          1 AATAGTA

        195 TTATTACAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12    6  0.32
  13   13  0.68

ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38


Consensus pattern (13 bp):   
AATAGTAATTAAT
Done.