Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007250.1 Corchorus olitorius cultivar O-4 contig07275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33


Found at i:590 original size:20 final size:20

Alignment explanation


    Indices: 565--604  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        555 GTCTAATTTT

                         *      
        565 AAGTAATGGCAATTTAAAAA
          1 AAGTAATGGCAATCTAAAAA

                                
        585 AAGTAATGGCAATCTAAAAA
          1 AAGTAATGGCAATCTAAAAA

        605 TATTTTTGAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.55, C:0.07, G:0.15, T:0.23


Consensus pattern (20 bp):   
AAGTAATGGCAATCTAAAAA
Done.