Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007251.1 Corchorus olitorius cultivar O-4 contig07276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33


Found at i:983 original size:21 final size:23

Alignment explanation


    Indices: 959--1006  Score: 64
    Period size: 24  Copynumber: 2.1  Consensus size: 23

        949 CTTCATAAAT

                                   
        959 ATCGAATT-CA-ATGAGTTTTCC
          1 ATCGAATTCCAGATGAGTTTTCC

                         *          
        980 ATCGAATTCCATGCTGAGTTTTCC
          1 ATCGAATTCCA-GATGAGTTTTCC

               
       1004 ATC
          1 ATC

       1007 TTGGACTTCA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  21    8  0.35
  22    2  0.09
  24   13  0.57

ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38


Consensus pattern (23 bp):   
ATCGAATTCCAGATGAGTTTTCC
Done.