Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007261.1 Corchorus olitorius cultivar O-4 contig07286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 764

Length: 1274
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31


Found at i:45 original size:16 final size:16

Alignment explanation


    Indices: 20--52  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

         10 GTGGCCCCTT

                            
         20 TTTATGTGTGGAATAC
          1 TTTATGTGTGGAATAC

                 *          
         36 TTTATTTGTGGAATAC
          1 TTTATGTGTGGAATAC

             
         52 T
          1 T

         53 CATGTGTGTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.24, C:0.06, G:0.21, T:0.48


Consensus pattern (16 bp):   
TTTATGTGTGGAATAC

Found at i:164 original size:21 final size:19

Alignment explanation


    Indices: 139--185  Score: 76
    Period size: 19  Copynumber: 2.5  Consensus size: 19

        129 ATATGTGAAC

                             * 
        139 ATGTGTGTGGAATATTCGT
          1 ATGTGTGTGGAATATTCAT

                    *          
        158 ATGTGTGTAGAATATTCAT
          1 ATGTGTGTGGAATATTCAT

                     
        177 ATGTGTGTG
          1 ATGTGTGTG

        186 TGAGGTGCAG


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.23, C:0.04, G:0.30, T:0.43


Consensus pattern (19 bp):   
ATGTGTGTGGAATATTCAT
Done.