Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007267.1 Corchorus olitorius cultivar O-4 contig07292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1366
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:661 original size:22 final size:24

Alignment explanation


    Indices: 623--675  Score: 83
    Period size: 23  Copynumber: 2.3  Consensus size: 24

        613 AAAAGTAACT

                                    
        623 AAGAAAAATGAACGAAAAAA-AAA
          1 AAGAAAAATGAACGAAAAAATAAA

                *                   
        646 AAGATAAAT-AACGAAAAAATAAA
          1 AAGAAAAATGAACGAAAAAATAAA

                   
        669 AAGAAAA
          1 AAGAAAA

        676 GGGTAAGAAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  22   10  0.37
  23   17  0.63

ACGTcount: A:0.77, C:0.04, G:0.11, T:0.08


Consensus pattern (24 bp):   
AAGAAAAATGAACGAAAAAATAAA
Done.