Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000727.1 Corchorus olitorius cultivar O-4 contig00727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36


Found at i:346 original size:12 final size:11

Alignment explanation


    Indices: 320--348  Score: 58
    Period size: 11  Copynumber: 2.6  Consensus size: 11

        310 AGTTCAATCG

                       
        320 AAAAATATTTC
          1 AAAAATATTTC

                       
        331 AAAAATATTTC
          1 AAAAATATTTC

                   
        342 AAAAATA
          1 AAAAATA

        349 AAAAAAATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31


Consensus pattern (11 bp):   
AAAAATATTTC

Found at i:686 original size:21 final size:21

Alignment explanation


    Indices: 660--700  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        650 TTTAAACCCT

                                  
        660 ATTGGAGAC-AAGTGGTACAAA
          1 ATTGGA-ACTAAGTGGTACAAA

                  *             
        681 ATTGGATCTAAGTGGTACAA
          1 ATTGGAACTAAGTGGTACAA

        701 GGGTTTATAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    1  0.06
  21   17  0.94

ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24


Consensus pattern (21 bp):   
ATTGGAACTAAGTGGTACAAA
Done.