Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007272.1 Corchorus olitorius cultivar O-4 contig07297, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33


Found at i:947 original size:15 final size:15

Alignment explanation


    Indices: 927--974  Score: 55
    Period size: 15  Copynumber: 3.2  Consensus size: 15

        917 ATTGGGGGAT

                           
        927 AATCAACACAAAAAC
          1 AATCAACACAAAAAC

                            
        942 AATCAATC-CAAAAAC
          1 AATCAA-CACAAAAAC

                       *    
        957 AATCCAACA-ACAAAC
          1 AAT-CAACACAAAAAC

               
        972 AAT
          1 AAT

        975 TTTCTATCCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 6
        0.81            0.03        0.17

Matches are distributed among these distances:
  15   25  0.86
  16    4  0.14

ACGTcount: A:0.62, C:0.27, G:0.00, T:0.10


Consensus pattern (15 bp):   
AATCAACACAAAAAC
Done.