Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007284.1 Corchorus olitorius cultivar O-4 contig07309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32


Found at i:881 original size:99 final size:96

Alignment explanation


    Indices: 757--933  Score: 282
    Period size: 99  Copynumber: 1.8  Consensus size: 96

        747 TTATAGCCAT

                               *                   *                    *  * 
        757 AAAAAAAATCATGAAATAAGGAATCATTTCCATGACTTCGAGAGAAAGATAAGAAATATAGATGT
          1 AAAAAAAATCATGAAATAAAGAATCATTTCCATGACTTCAAGAGAAAGATAAGAAATATACATAT

                   *                       
        822 GGAGATTGATCCTGTATTTATCATTTATAAC
         66 GGAGATTAATCCTGTATTTATCATTTATAAC

                                                                             
        853 AAAAAAAATCATGAAAATAAAAAGAATCATTTCCATGACTTCAAGAGAAAGATAAGAAATATACA
          1 AAAAAAAATCATG-AAAT--AAAGAATCATTTCCATGACTTCAAGAGAAAGATAAGAAATATACA

                            
        918 TATGGAGATTAATCCT
         63 TATGGAGATTAATCCT

        934 AAAAATATAG


Statistics
Matches: 73,  Mismatches: 5, Indels: 3
        0.90            0.06        0.04

Matches are distributed among these distances:
  96   13  0.18
  97    4  0.05
  99   56  0.77

ACGTcount: A:0.48, C:0.11, G:0.15, T:0.27


Consensus pattern (96 bp):   
AAAAAAAATCATGAAATAAAGAATCATTTCCATGACTTCAAGAGAAAGATAAGAAATATACATAT
GGAGATTAATCCTGTATTTATCATTTATAAC
Done.