Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007287.1 Corchorus olitorius cultivar O-4 contig07312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1370
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:716 original size:5 final size:5

Alignment explanation


    Indices: 706--730  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

        696 TGTTTTTGTG

                                         
        706 ATTTT ATTTT ATTTT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT

        731 TTGGTATTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
ATTTT

Done.