Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007293.1 Corchorus olitorius cultivar O-4 contig07318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1060
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28


Found at i:267 original size:28 final size:27

Alignment explanation


    Indices: 225--279  Score: 76
    Period size: 26  Copynumber: 2.0  Consensus size: 27

        215 ACTGAGACTA

                      *                  
        225 GACTCGAAACTGACTCGAAAAAACAAACT
          1 GACTCGAAACCGACTC--AAAAACAAACT

                                       
        254 GACTC-AAACCGACTCAAAAACAAACT
          1 GACTCGAAACCGACTCAAAAACAAACT

        280 CAAAAAAAAC


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  26   11  0.44
  28    9  0.36
  29    5  0.20

ACGTcount: A:0.49, C:0.27, G:0.11, T:0.13


Consensus pattern (27 bp):   
GACTCGAAACCGACTCAAAAACAAACT
Done.