Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007294.1 Corchorus olitorius cultivar O-4 contig07319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2161
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35


Found at i:1291 original size:28 final size:29

Alignment explanation


    Indices: 1250--1304  Score: 103
    Period size: 28  Copynumber: 1.9  Consensus size: 29

       1240 TCACCCATGT

                                         
       1250 TGGGTTGATTAGATTGAGAGTTTGCTACA
          1 TGGGTTGATTAGATTGAGAGTTTGCTACA

                                       
       1279 TGGG-TGATTAGATTGAGAGTTTGCTA
          1 TGGGTTGATTAGATTGAGAGTTTGCTA

       1305 GAGAGATTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  28   22  0.85
  29    4  0.15

ACGTcount: A:0.24, C:0.05, G:0.33, T:0.38


Consensus pattern (29 bp):   
TGGGTTGATTAGATTGAGAGTTTGCTACA
Done.