Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007296.1 Corchorus olitorius cultivar O-4 contig07321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1352
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32


Found at i:352 original size:13 final size:13

Alignment explanation


    Indices: 334--358  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        324 TTTTTACCAC

                         
        334 CTTAAAATTATTG
          1 CTTAAAATTATTG

                        
        347 CTTAAAATTATT
          1 CTTAAAATTATT

        359 TTTTGGCAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48


Consensus pattern (13 bp):   
CTTAAAATTATTG

Found at i:759 original size:16 final size:16

Alignment explanation


    Indices: 738--769  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        728 TCAAATTAAG

                            
        738 CCTAAATTCATGTGCT
          1 CCTAAATTCATGTGCT

                            
        754 CCTAAATTCATGTGCT
          1 CCTAAATTCATGTGCT

        770 AAGGACCTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38


Consensus pattern (16 bp):   
CCTAAATTCATGTGCT
Done.